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feature extraction 11.5 software  (Agilent technologies)


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    Agilent technologies feature extraction 11.5 software
    Feature Extraction 11.5 Software, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/feature+extraction+11%2E5+software/pmc10669861-61-2-1
    Average 90 stars, based on 1 article reviews
    feature extraction 11.5 software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Extraction:

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The Agilent Feature Extraction 11.5 software elaborated the TIFF images for grid alignment and expression data analysis.

    Article Title: Biotic Stress-Induced Priming and De-Priming of Transcriptional Memory in Arabidopsis and Apple.
    Article Snippet: NimbleGen MS 200 v1.2 software was used for microarray scans, and the Agilent Feature Extraction 11.5 software was used to extract pair-data files from the scanned images.

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The expression data were normalized using quartile normalization and the (RMA) algorithm that was included in the Agilent Feature Extraction 11.5 software.

    Article Title: Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes.
    Article Snippet: The response of ecosystem biodiversity and functioning to alien plant invasion with natural development or artificial activities has become a focal interest in general and in applied environmental and ecological research (Callaway & Maron, 2006; Waller et al., 2020).. Microorganisms can be either responders or drivers of plant invasions.. Understanding how microbial diversity responds to invasion and how microbially driven ecological functions change are still fundamental goals of invasion studies (Dawson & Schrama, 2016).

    Article Title: The role of biocrusts in nitrogen cycling on the tropical reef islands, South China Sea
    Article Snippet: Harboring polyextremotolerant microbial topsoil communities, biological soil crusts (biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands.. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array (GeoChip 5.0) to reveal nitrogen (N) cycling processes involved in these samples.

    Article Title: Unexpected enrichment of antibiotic resistance genes and organic remediation genes in high-altitude lakes at Eastern Tibetan Plateau.
    Article Snippet: Abbreviations: ARGs, antibiotic resistance genes; ORGs, o pollutants; Adonis, permutational multivariate analysis; AN antibiotic-resistant bacteria; PAHs, polycyclic aromatic hydr ⁎ Corresponding author.. E-mail address: ljzhou@niglas.ac.cn (L.-J.. Zhou). http://dx.doi.org/10.1016/j.scitotenv.2023.162554 Received 30 November 2022; Received in revised for Available online 2 March 2023 0048-9697/© 2023 Elsevier B.V. All rights reserved.

    Article Title: Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
    Article Snippet: While cover crop residue (CR) incorporation offsets soil organic C (SOC) losses caused by plastic-film mulching (PFM), the microbial modulators and mechanisms of SOC accumulation remain poorly understood.. Using functional gene microarray, soil enzyme activities, and soil density fractionation approaches, we investigated the mechanism, by incorporating CR (13.0 and 9 Mg ha−1 on a dry weight basis) under PFM in organic maize cropping systems, spanning 2 consecutive years.. Compared to no-mulching, PFM without CR amendment significantly decreased SOC stock by 23%, corresponding to an increase in CO2 efflux by 74%, a decrease in light fraction C (LFOC) and heavy fraction C (HFOC) by 13 and 11%, respectively, and an increase in relative abundances of labile as well as recalcitrant C-degrading genes and related soil enzyme activities.

    Article Title: Salinity controls soil microbial community structure and function in coastal estuarine wetlands.
    Article Snippet: Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood.. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~ 5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA genes sequencing and microarray-based GeoChip 5.0, respectively.. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith’s phylogenetic diversity than that in the freshwater-affected habitats.

    Software:

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The Agilent Feature Extraction 11.5 software elaborated the TIFF images for grid alignment and expression data analysis.

    Article Title: Biotic Stress-Induced Priming and De-Priming of Transcriptional Memory in Arabidopsis and Apple.
    Article Snippet: NimbleGen MS 200 v1.2 software was used for microarray scans, and the Agilent Feature Extraction 11.5 software was used to extract pair-data files from the scanned images.

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The expression data were normalized using quartile normalization and the (RMA) algorithm that was included in the Agilent Feature Extraction 11.5 software.

    Article Title: Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes.
    Article Snippet: The response of ecosystem biodiversity and functioning to alien plant invasion with natural development or artificial activities has become a focal interest in general and in applied environmental and ecological research (Callaway & Maron, 2006; Waller et al., 2020).. Microorganisms can be either responders or drivers of plant invasions.. Understanding how microbial diversity responds to invasion and how microbially driven ecological functions change are still fundamental goals of invasion studies (Dawson & Schrama, 2016).

    Article Title: The role of biocrusts in nitrogen cycling on the tropical reef islands, South China Sea
    Article Snippet: Harboring polyextremotolerant microbial topsoil communities, biological soil crusts (biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands.. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array (GeoChip 5.0) to reveal nitrogen (N) cycling processes involved in these samples.

    Article Title: Unexpected enrichment of antibiotic resistance genes and organic remediation genes in high-altitude lakes at Eastern Tibetan Plateau.
    Article Snippet: Abbreviations: ARGs, antibiotic resistance genes; ORGs, o pollutants; Adonis, permutational multivariate analysis; AN antibiotic-resistant bacteria; PAHs, polycyclic aromatic hydr ⁎ Corresponding author.. E-mail address: ljzhou@niglas.ac.cn (L.-J.. Zhou). http://dx.doi.org/10.1016/j.scitotenv.2023.162554 Received 30 November 2022; Received in revised for Available online 2 March 2023 0048-9697/© 2023 Elsevier B.V. All rights reserved.

    Article Title: Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
    Article Snippet: While cover crop residue (CR) incorporation offsets soil organic C (SOC) losses caused by plastic-film mulching (PFM), the microbial modulators and mechanisms of SOC accumulation remain poorly understood.. Using functional gene microarray, soil enzyme activities, and soil density fractionation approaches, we investigated the mechanism, by incorporating CR (13.0 and 9 Mg ha−1 on a dry weight basis) under PFM in organic maize cropping systems, spanning 2 consecutive years.. Compared to no-mulching, PFM without CR amendment significantly decreased SOC stock by 23%, corresponding to an increase in CO2 efflux by 74%, a decrease in light fraction C (LFOC) and heavy fraction C (HFOC) by 13 and 11%, respectively, and an increase in relative abundances of labile as well as recalcitrant C-degrading genes and related soil enzyme activities.

    Article Title: Salinity controls soil microbial community structure and function in coastal estuarine wetlands.
    Article Snippet: Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood.. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~ 5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA genes sequencing and microarray-based GeoChip 5.0, respectively.. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith’s phylogenetic diversity than that in the freshwater-affected habitats.

    Expressing:

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The Agilent Feature Extraction 11.5 software elaborated the TIFF images for grid alignment and expression data analysis.

    Article Title: Biotic Stress-Induced Priming and De-Priming of Transcriptional Memory in Arabidopsis and Apple.
    Article Snippet: NimbleGen MS 200 v1.2 software was used for microarray scans, and the Agilent Feature Extraction 11.5 software was used to extract pair-data files from the scanned images.

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The expression data were normalized using quartile normalization and the (RMA) algorithm that was included in the Agilent Feature Extraction 11.5 software.

    Article Title: Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes.
    Article Snippet: The response of ecosystem biodiversity and functioning to alien plant invasion with natural development or artificial activities has become a focal interest in general and in applied environmental and ecological research (Callaway & Maron, 2006; Waller et al., 2020).. Microorganisms can be either responders or drivers of plant invasions.. Understanding how microbial diversity responds to invasion and how microbially driven ecological functions change are still fundamental goals of invasion studies (Dawson & Schrama, 2016).

    Article Title: The role of biocrusts in nitrogen cycling on the tropical reef islands, South China Sea
    Article Snippet: Harboring polyextremotolerant microbial topsoil communities, biological soil crusts (biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands.. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array (GeoChip 5.0) to reveal nitrogen (N) cycling processes involved in these samples.

    Article Title: Unexpected enrichment of antibiotic resistance genes and organic remediation genes in high-altitude lakes at Eastern Tibetan Plateau.
    Article Snippet: Abbreviations: ARGs, antibiotic resistance genes; ORGs, o pollutants; Adonis, permutational multivariate analysis; AN antibiotic-resistant bacteria; PAHs, polycyclic aromatic hydr ⁎ Corresponding author.. E-mail address: ljzhou@niglas.ac.cn (L.-J.. Zhou). http://dx.doi.org/10.1016/j.scitotenv.2023.162554 Received 30 November 2022; Received in revised for Available online 2 March 2023 0048-9697/© 2023 Elsevier B.V. All rights reserved.

    Article Title: Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
    Article Snippet: While cover crop residue (CR) incorporation offsets soil organic C (SOC) losses caused by plastic-film mulching (PFM), the microbial modulators and mechanisms of SOC accumulation remain poorly understood.. Using functional gene microarray, soil enzyme activities, and soil density fractionation approaches, we investigated the mechanism, by incorporating CR (13.0 and 9 Mg ha−1 on a dry weight basis) under PFM in organic maize cropping systems, spanning 2 consecutive years.. Compared to no-mulching, PFM without CR amendment significantly decreased SOC stock by 23%, corresponding to an increase in CO2 efflux by 74%, a decrease in light fraction C (LFOC) and heavy fraction C (HFOC) by 13 and 11%, respectively, and an increase in relative abundances of labile as well as recalcitrant C-degrading genes and related soil enzyme activities.

    Article Title: Salinity controls soil microbial community structure and function in coastal estuarine wetlands.
    Article Snippet: Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood.. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~ 5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA genes sequencing and microarray-based GeoChip 5.0, respectively.. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith’s phylogenetic diversity than that in the freshwater-affected habitats.

    Hybridization:

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The Agilent Feature Extraction 11.5 software elaborated the TIFF images for grid alignment and expression data analysis.

    Article Title: Biotic Stress-Induced Priming and De-Priming of Transcriptional Memory in Arabidopsis and Apple.
    Article Snippet: NimbleGen MS 200 v1.2 software was used for microarray scans, and the Agilent Feature Extraction 11.5 software was used to extract pair-data files from the scanned images.

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The expression data were normalized using quartile normalization and the (RMA) algorithm that was included in the Agilent Feature Extraction 11.5 software.

    Article Title: Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes.
    Article Snippet: The response of ecosystem biodiversity and functioning to alien plant invasion with natural development or artificial activities has become a focal interest in general and in applied environmental and ecological research (Callaway & Maron, 2006; Waller et al., 2020).. Microorganisms can be either responders or drivers of plant invasions.. Understanding how microbial diversity responds to invasion and how microbially driven ecological functions change are still fundamental goals of invasion studies (Dawson & Schrama, 2016).

    Article Title: The role of biocrusts in nitrogen cycling on the tropical reef islands, South China Sea
    Article Snippet: Harboring polyextremotolerant microbial topsoil communities, biological soil crusts (biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands.. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array (GeoChip 5.0) to reveal nitrogen (N) cycling processes involved in these samples.

    Article Title: Unexpected enrichment of antibiotic resistance genes and organic remediation genes in high-altitude lakes at Eastern Tibetan Plateau.
    Article Snippet: Abbreviations: ARGs, antibiotic resistance genes; ORGs, o pollutants; Adonis, permutational multivariate analysis; AN antibiotic-resistant bacteria; PAHs, polycyclic aromatic hydr ⁎ Corresponding author.. E-mail address: ljzhou@niglas.ac.cn (L.-J.. Zhou). http://dx.doi.org/10.1016/j.scitotenv.2023.162554 Received 30 November 2022; Received in revised for Available online 2 March 2023 0048-9697/© 2023 Elsevier B.V. All rights reserved.

    Article Title: Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
    Article Snippet: While cover crop residue (CR) incorporation offsets soil organic C (SOC) losses caused by plastic-film mulching (PFM), the microbial modulators and mechanisms of SOC accumulation remain poorly understood.. Using functional gene microarray, soil enzyme activities, and soil density fractionation approaches, we investigated the mechanism, by incorporating CR (13.0 and 9 Mg ha−1 on a dry weight basis) under PFM in organic maize cropping systems, spanning 2 consecutive years.. Compared to no-mulching, PFM without CR amendment significantly decreased SOC stock by 23%, corresponding to an increase in CO2 efflux by 74%, a decrease in light fraction C (LFOC) and heavy fraction C (HFOC) by 13 and 11%, respectively, and an increase in relative abundances of labile as well as recalcitrant C-degrading genes and related soil enzyme activities.

    Article Title: Salinity controls soil microbial community structure and function in coastal estuarine wetlands.
    Article Snippet: Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood.. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~ 5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA genes sequencing and microarray-based GeoChip 5.0, respectively.. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith’s phylogenetic diversity than that in the freshwater-affected habitats.

    Microarray:

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The Agilent Feature Extraction 11.5 software elaborated the TIFF images for grid alignment and expression data analysis.

    Article Title: Biotic Stress-Induced Priming and De-Priming of Transcriptional Memory in Arabidopsis and Apple.
    Article Snippet: NimbleGen MS 200 v1.2 software was used for microarray scans, and the Agilent Feature Extraction 11.5 software was used to extract pair-data files from the scanned images.

    Article Title: Exploring Circulating Long Non-Coding RNAs in Mild Cognitive Impairment Patients’ Blood
    Article Snippet: The expression data were normalized using quartile normalization and the (RMA) algorithm that was included in the Agilent Feature Extraction 11.5 software.

    Article Title: Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes.
    Article Snippet: The response of ecosystem biodiversity and functioning to alien plant invasion with natural development or artificial activities has become a focal interest in general and in applied environmental and ecological research (Callaway & Maron, 2006; Waller et al., 2020).. Microorganisms can be either responders or drivers of plant invasions.. Understanding how microbial diversity responds to invasion and how microbially driven ecological functions change are still fundamental goals of invasion studies (Dawson & Schrama, 2016).

    Article Title: The role of biocrusts in nitrogen cycling on the tropical reef islands, South China Sea
    Article Snippet: Harboring polyextremotolerant microbial topsoil communities, biological soil crusts (biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands.. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array (GeoChip 5.0) to reveal nitrogen (N) cycling processes involved in these samples.

    Article Title: Unexpected enrichment of antibiotic resistance genes and organic remediation genes in high-altitude lakes at Eastern Tibetan Plateau.
    Article Snippet: Abbreviations: ARGs, antibiotic resistance genes; ORGs, o pollutants; Adonis, permutational multivariate analysis; AN antibiotic-resistant bacteria; PAHs, polycyclic aromatic hydr ⁎ Corresponding author.. E-mail address: ljzhou@niglas.ac.cn (L.-J.. Zhou). http://dx.doi.org/10.1016/j.scitotenv.2023.162554 Received 30 November 2022; Received in revised for Available online 2 March 2023 0048-9697/© 2023 Elsevier B.V. All rights reserved.

    Article Title: Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
    Article Snippet: While cover crop residue (CR) incorporation offsets soil organic C (SOC) losses caused by plastic-film mulching (PFM), the microbial modulators and mechanisms of SOC accumulation remain poorly understood.. Using functional gene microarray, soil enzyme activities, and soil density fractionation approaches, we investigated the mechanism, by incorporating CR (13.0 and 9 Mg ha−1 on a dry weight basis) under PFM in organic maize cropping systems, spanning 2 consecutive years.. Compared to no-mulching, PFM without CR amendment significantly decreased SOC stock by 23%, corresponding to an increase in CO2 efflux by 74%, a decrease in light fraction C (LFOC) and heavy fraction C (HFOC) by 13 and 11%, respectively, and an increase in relative abundances of labile as well as recalcitrant C-degrading genes and related soil enzyme activities.

    Article Title: Salinity controls soil microbial community structure and function in coastal estuarine wetlands.
    Article Snippet: Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood.. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~ 5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA genes sequencing and microarray-based GeoChip 5.0, respectively.. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith’s phylogenetic diversity than that in the freshwater-affected habitats.



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